PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA13107 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA1313 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA13747 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA14809 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA14810 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA14856 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA14863 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA15256 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA15527 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA15828 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA15829 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16068 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16162 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16164 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16405 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16413 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA16415 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA17066 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA17685 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA17733 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA18068 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA18240 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA18923 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19169 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19205 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19210 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19212 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19214 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19811 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19908 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19984 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA19986 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA21173 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA21195 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA21429 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA21910 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA23276 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA24377 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA24467 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA25217 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA25218 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA25219 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA26309 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA26962 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA26964 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA26966 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA26970 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA27012 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA27399 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA27545 Steroid BR6OX2/CYP85A2 low borderline