PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA28001 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA28136 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA28196 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA28880 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA28882 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30078 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30079 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30298 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30299 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30407 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA30916 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA31160 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA31162 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA31534 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA31933 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32186 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32365 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32380 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32513 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32651 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32756 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32765 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA32875 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA33048 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA34429 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA34431 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA34432 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA34485 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35067 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35069 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35077 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35321 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35416 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA3560 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35657 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35658 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA35949 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA36211 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA36740 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA36926 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA37245 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA37296 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA37428 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA38195 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA38277 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA38966 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA38971 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA39448 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA40364 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA40556 Steroid BR6OX2/CYP85A2 low borderline