PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA12069 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA1284 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA14840 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA17877 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA18148 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA19667 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA19671 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA19787 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA19788 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA19871 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA21491 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA21975 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA22160 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA22253 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
rhynchospora_pubera_mRNA23807 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA24854 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
rhynchospora_pubera_mRNA25251 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
rhynchospora_pubera_mRNA25668 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA25861 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA25862 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27377 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA27380 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
rhynchospora_pubera_mRNA27533 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27534 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27535 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27536 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27537 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27538 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27539 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA28508 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA28510 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA28623 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA30337 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31674 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31675 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31676 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31677 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA31726 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31727 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31728 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31729 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31730 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31731 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31732 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31733 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31836 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32418 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32419 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32477 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA32588 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE