PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA50870 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA51269 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA51887 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
rhynchospora_pubera_mRNA52286 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA52545 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA52754 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA52782 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA52783 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA53414 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA53918 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA55883 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA55887 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA56092 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA56093 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
rhynchospora_pubera_mRNA57388 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
rhynchospora_pubera_mRNA57662 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA59870 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA59974 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA60410 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA60506 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA62975 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA63229 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA64458 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA64459 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
rhynchospora_pubera_mRNA64460 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA64545 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA64603 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA64607 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA66752 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA67277 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA67388 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
rhynchospora_pubera_mRNA67492 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA67517 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
rhynchospora_pubera_mRNA6764 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA68656 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA69170 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA69367 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA70180 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
rhynchospora_pubera_mRNA70586 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA71007 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA71203 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA71276 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72700 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA72702 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
rhynchospora_pubera_mRNA72847 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72848 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72851 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72852 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72853 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA72854 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM