PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA42388 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42389 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42390 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA43347 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA43373 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA44112 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
rhynchospora_pubera_mRNA44546 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA44727 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA44728 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA44768 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA47308 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA48956 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA49057 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA49551 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA51845 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA53091 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA53514 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA53918 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA53947 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA54124 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA54127 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA54130 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA54542 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA59960 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA64545 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA66024 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA66442 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA66445 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA66752 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA67277 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA67304 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA6749 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
rhynchospora_pubera_mRNA67805 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA70143 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA71276 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA71543 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA72205 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA72847 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA72851 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA72853 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA72854 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA72855 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA73810 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA73834 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA74268 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
rhynchospora_pubera_mRNA74786 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA74972 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA74973 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA74974 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA75012 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH