PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA75013 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
rhynchospora_pubera_mRNA77537 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA78441 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA79237 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA79346 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA81560 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA83146 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA83645 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA85401 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA87559 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA87891 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA87927 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA87928 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA87929 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA88106 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA89287 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA89311 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA90003 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90267 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90268 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90269 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90270 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90271 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90273 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90274 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA90890 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL