PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA62685 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA63371 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA64186 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA64188 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65082 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65083 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65085 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA66398 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67335 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67336 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67341 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67342 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67351 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67352 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67863 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA67864 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA68102 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68728 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68729 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA68730 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68733 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA69030 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA70824 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA70982 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA71148 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA71316 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA72199 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA72201 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA76488 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA77109 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA78797 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA79152 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA79155 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA79859 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA79925 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA79926 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA80038 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA80556 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA81335 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA81539 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82245 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA82247 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82248 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA82250 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82251 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA83080 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA83081 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83082 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83790 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83792 Phenylpropanoid COMT medium pass