PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA1321 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA1335 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA13645 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA14095 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA14686 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA17179 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA17180 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA17354 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA17355 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA17773 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA18029 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA18125 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA18305 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA20312 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA20313 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA20314 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA20838 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA21297 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA21298 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA21299 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA21300 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA21951 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA22293 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA22294 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA22503 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA22629 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA22631 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA23318 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA25253 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA25965 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA25973 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA26359 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA26773 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA27199 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA27443 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA28935 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA29257 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA29984 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30289 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30290 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30335 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31495 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31527 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31589 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA33104 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA33905 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA34141 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA34610 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA36672 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA36862 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL