PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA36964 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA37868 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA37869 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA37870 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39564 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39565 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39566 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA40468 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40469 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40470 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40471 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40988 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA41179 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA41180 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA42051 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA42295 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA43790 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA44115 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45134 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45135 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45176 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46316 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46340 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46379 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46439 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA47982 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA48793 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49377 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49378 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49379 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49580 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49707 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49708 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA49709 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA52869 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA52874 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA53228 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA53739 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA53894 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA53895 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA54004 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA54005 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA54006 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA54007 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA54477 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA54906 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA54907 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA54909 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA5594 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA56606 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL