PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA56608 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA56609 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA56610 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA57287 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA57542 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA57637 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA60121 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA60256 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA62816 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA62997 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA63098 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA63333 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA63953 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA63954 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA63955 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA63956 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA65650 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA65651 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA65652 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA66094 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA66095 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA66096 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA66558 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA66559 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA66560 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA67095 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67096 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67258 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA67632 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67633 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67634 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67831 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67966 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67967 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA67968 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68679 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68681 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68682 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68683 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68684 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68685 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68686 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68687 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68688 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68689 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA68690 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA705 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA70588 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA71308 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA71314 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH