PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA71683 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA72102 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA72103 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA72521 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA72771 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA74265 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA74367 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA75383 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA75384 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA75425 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA76557 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA76583 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA76617 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA76676 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA78211 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA78981 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA79675 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA79681 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA80118 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA80327 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA82292 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA82990 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA83118 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA83314 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA83315 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA83316 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA83956 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA84725 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA86259 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA86317 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA86747 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA87486 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA87530 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA87820 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA88542 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA88543 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA88859 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA90358 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA90585 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL