PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA85339 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA85468 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA85742 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA85918 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA86308 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA86309 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA86462 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA86463 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA86486 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA86711 Terpenoid CYP76 low borderline CYP76__00014__sp_I3PFJ5_C76AD_BETVU
rhynchospora_pubera_mRNA87307 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA87413 Terpenoid CYP76 medium pass CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA87475 Terpenoid CYP76 low borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
rhynchospora_pubera_mRNA87521 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA87522 Terpenoid CYP76 medium borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
rhynchospora_pubera_mRNA87738 Terpenoid CYP76 low borderline CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
rhynchospora_pubera_mRNA87739 Terpenoid CYP76 low borderline CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
rhynchospora_pubera_mRNA87847 Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
rhynchospora_pubera_mRNA89019 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA89607 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA89608 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA89670 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA89671 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA89695 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA89806 Terpenoid CYP76 medium pass CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
rhynchospora_pubera_mRNA90771 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA90772 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA90773 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
rhynchospora_pubera_mRNA9625 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA9705 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO