PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA25191 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA25370 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA25543 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA26092 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA26095 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA28933 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA28934 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA29314 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA29468 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30187 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30188 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30189 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30222 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31018 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31170 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31171 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31172 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA31173 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31174 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA31183 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31625 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA32337 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA33216 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA33293 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA33354 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA33596 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA34040 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA34137 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA34283 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA34787 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA34788 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA3500 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA35176 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA35196 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA35198 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA35806 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA35826 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA35827 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA35828 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA35829 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA35851 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA36030 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA36344 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA36814 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA36816 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA36825 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA37654 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA37658 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA38063 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA38337 Flavonoid F3H low borderline