PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA38338 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA38339 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA38340 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA38342 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA39364 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39365 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39366 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39632 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39634 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39635 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA39700 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA40861 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA43787 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA43788 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA43789 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA44171 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA44332 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA44744 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA45022 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA45023 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA45024 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA45998 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA45999 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46000 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46001 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46002 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46003 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46012 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA46474 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA4691 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA47200 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA48115 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA48190 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA48244 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA48485 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA48823 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA48824 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA48910 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA49060 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA49440 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA49441 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA49998 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA51003 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51004 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51005 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51130 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51484 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51485 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51486 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA51487 Flavonoid F3H medium borderline