PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA61427 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61429 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61934 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61954 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61955 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61956 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA61958 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA61959 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61981 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62079 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62175 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62484 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62953 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62961 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA63614 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA63619 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64163 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA64516 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64517 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64518 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64519 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64520 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA65437 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65438 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65439 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65721 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65722 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65723 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65797 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA66974 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA67702 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA67703 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA68271 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA69504 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69505 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69621 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69622 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69779 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA69780 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69782 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69783 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA69784 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70158 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70159 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70161 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70162 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70290 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70293 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70530 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA70889 Flavonoid F3H medium borderline