PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA71441 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA71444 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA73929 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA74415 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA74567 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75280 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75281 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75283 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75284 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75317 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA75725 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA76259 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA76260 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA76261 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA76262 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA76270 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA76711 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA77427 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA78337 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA78407 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA78458 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA78698 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79106 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79107 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA7929 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79350 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79568 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79570 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79833 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA79834 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA80263 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA80443 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA80614 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA80866 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA80978 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA80979 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81142 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81143 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81577 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81579 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81580 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81584 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81704 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA81707 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA82683 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA83247 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA83642 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA83839 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA84247 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA84487 Flavonoid F3H medium borderline