PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA12068 Alkaloid GS low borderline
rhynchospora_pubera_mRNA12069 Alkaloid GS low borderline
rhynchospora_pubera_mRNA12602 Alkaloid GS low borderline
rhynchospora_pubera_mRNA12862 Alkaloid GS low borderline
rhynchospora_pubera_mRNA13038 Alkaloid GS low borderline
rhynchospora_pubera_mRNA13462 Alkaloid GS low borderline
rhynchospora_pubera_mRNA14840 Alkaloid GS medium pass
rhynchospora_pubera_mRNA15654 Alkaloid GS low borderline
rhynchospora_pubera_mRNA16374 Alkaloid GS medium pass
rhynchospora_pubera_mRNA17145 Alkaloid GS low borderline
rhynchospora_pubera_mRNA17877 Alkaloid GS low borderline
rhynchospora_pubera_mRNA18148 Alkaloid GS high pass
rhynchospora_pubera_mRNA19072 Alkaloid GS low borderline
rhynchospora_pubera_mRNA19667 Alkaloid GS low borderline
rhynchospora_pubera_mRNA19787 Alkaloid GS high pass
rhynchospora_pubera_mRNA19788 Alkaloid GS high pass
rhynchospora_pubera_mRNA22062 Alkaloid GS low borderline
rhynchospora_pubera_mRNA22253 Alkaloid GS high pass
rhynchospora_pubera_mRNA24706 Alkaloid GS low borderline
rhynchospora_pubera_mRNA24854 Alkaloid GS high pass
rhynchospora_pubera_mRNA24963 Alkaloid GS low borderline
rhynchospora_pubera_mRNA25251 Alkaloid GS high pass
rhynchospora_pubera_mRNA27376 Alkaloid GS low borderline
rhynchospora_pubera_mRNA27377 Alkaloid GS low borderline
rhynchospora_pubera_mRNA27380 Alkaloid GS low borderline
rhynchospora_pubera_mRNA28510 Alkaloid GS high pass
rhynchospora_pubera_mRNA30547 Alkaloid GS low borderline
rhynchospora_pubera_mRNA32588 Alkaloid GS high pass
rhynchospora_pubera_mRNA34158 Alkaloid GS high pass
rhynchospora_pubera_mRNA34159 Alkaloid GS high pass
rhynchospora_pubera_mRNA34160 Alkaloid GS high pass
rhynchospora_pubera_mRNA34450 Alkaloid GS medium pass
rhynchospora_pubera_mRNA35107 Alkaloid GS medium pass
rhynchospora_pubera_mRNA35834 Alkaloid GS low borderline
rhynchospora_pubera_mRNA36839 Alkaloid GS high pass
rhynchospora_pubera_mRNA37112 Alkaloid GS low borderline
rhynchospora_pubera_mRNA38400 Alkaloid GS high pass
rhynchospora_pubera_mRNA38401 Alkaloid GS high pass
rhynchospora_pubera_mRNA38515 Alkaloid GS low borderline
rhynchospora_pubera_mRNA39111 Alkaloid GS low borderline
rhynchospora_pubera_mRNA39534 Alkaloid GS low borderline
rhynchospora_pubera_mRNA42228 Alkaloid GS low borderline
rhynchospora_pubera_mRNA42229 Alkaloid GS low borderline
rhynchospora_pubera_mRNA42231 Alkaloid GS low borderline
rhynchospora_pubera_mRNA43374 Alkaloid GS high pass
rhynchospora_pubera_mRNA47458 Alkaloid GS high pass
rhynchospora_pubera_mRNA48933 Alkaloid GS high pass
rhynchospora_pubera_mRNA48934 Alkaloid GS high pass
rhynchospora_pubera_mRNA49138 Alkaloid GS low borderline
rhynchospora_pubera_mRNA49268 Alkaloid GS high pass