PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA51269 Alkaloid GS high pass
rhynchospora_pubera_mRNA51738 Alkaloid GS low borderline
rhynchospora_pubera_mRNA51887 Alkaloid GS high pass
rhynchospora_pubera_mRNA51999 Alkaloid GS low borderline
rhynchospora_pubera_mRNA52286 Alkaloid GS high pass
rhynchospora_pubera_mRNA54940 Alkaloid GS low borderline
rhynchospora_pubera_mRNA55383 Alkaloid GS low borderline
rhynchospora_pubera_mRNA55887 Alkaloid GS low borderline
rhynchospora_pubera_mRNA56092 Alkaloid GS high pass
rhynchospora_pubera_mRNA56093 Alkaloid GS high pass
rhynchospora_pubera_mRNA57388 Alkaloid GS low borderline
rhynchospora_pubera_mRNA57662 Alkaloid GS high pass
rhynchospora_pubera_mRNA59035 Alkaloid GS medium pass
rhynchospora_pubera_mRNA59974 Alkaloid GS medium pass
rhynchospora_pubera_mRNA60410 Alkaloid GS medium pass
rhynchospora_pubera_mRNA608 Alkaloid GS low borderline
rhynchospora_pubera_mRNA61336 Alkaloid GS medium pass
rhynchospora_pubera_mRNA62975 Alkaloid GS high pass
rhynchospora_pubera_mRNA63229 Alkaloid GS low borderline
rhynchospora_pubera_mRNA64458 Alkaloid GS high pass
rhynchospora_pubera_mRNA64459 Alkaloid GS high pass
rhynchospora_pubera_mRNA64460 Alkaloid GS medium pass
rhynchospora_pubera_mRNA64607 Alkaloid GS low borderline
rhynchospora_pubera_mRNA65203 Alkaloid GS low borderline
rhynchospora_pubera_mRNA67388 Alkaloid GS low borderline
rhynchospora_pubera_mRNA67517 Alkaloid GS high pass
rhynchospora_pubera_mRNA69367 Alkaloid GS high pass
rhynchospora_pubera_mRNA70034 Alkaloid GS low borderline
rhynchospora_pubera_mRNA70180 Alkaloid GS high pass
rhynchospora_pubera_mRNA70295 Alkaloid GS low borderline
rhynchospora_pubera_mRNA70586 Alkaloid GS high pass
rhynchospora_pubera_mRNA72699 Alkaloid GS low borderline
rhynchospora_pubera_mRNA72700 Alkaloid GS low borderline
rhynchospora_pubera_mRNA72702 Alkaloid GS low borderline
rhynchospora_pubera_mRNA73836 Alkaloid GS high pass
rhynchospora_pubera_mRNA77678 Alkaloid GS high pass
rhynchospora_pubera_mRNA79216 Alkaloid GS high pass
rhynchospora_pubera_mRNA79217 Alkaloid GS medium pass
rhynchospora_pubera_mRNA79218 Alkaloid GS high pass
rhynchospora_pubera_mRNA80325 Alkaloid GS high pass
rhynchospora_pubera_mRNA80722 Alkaloid GS high pass
rhynchospora_pubera_mRNA81401 Alkaloid GS low borderline
rhynchospora_pubera_mRNA81599 Alkaloid GS high pass
rhynchospora_pubera_mRNA83422 Alkaloid GS high pass
rhynchospora_pubera_mRNA83556 Alkaloid GS low borderline
rhynchospora_pubera_mRNA85256 Alkaloid GS high pass
rhynchospora_pubera_mRNA89285 Alkaloid GS high pass
rhynchospora_pubera_mRNA90414 Alkaloid GS low borderline
rhynchospora_pubera_mRNA90415 Alkaloid GS low borderline