PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA19738 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA19812 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA19898 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19966 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19984 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA20004 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA20005 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA20007 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA20426 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA21195 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA21208 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA21310 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA21910 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA22136 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA22280 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA22282 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA22459 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA22602 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA23276 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA23359 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA23362 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA23561 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA23637 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA24034 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24377 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24465 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24466 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24467 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24468 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24469 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24470 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24547 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA24736 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA24739 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA25049 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA25216 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA25217 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA25218 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA25990 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA25991 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA25993 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA26309 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA26962 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA26965 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA26968 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA26970 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA27011 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA27012 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA27474 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA28113 Flavonoid IFS low borderline