PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA28136 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA28137 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA28157 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA28158 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA28159 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA28196 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA28484 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA28770 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA29587 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA29839 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA29840 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA29957 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA30079 Flavonoid IFS medium pass
rhynchospora_pubera_mRNA30298 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA30299 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA30530 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA30554 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA30625 Flavonoid IFS high pass
rhynchospora_pubera_mRNA30640 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA30915 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA3101 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA31160 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA31269 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA31408 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA31531 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA31534 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA31933 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA32037 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32186 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32509 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32510 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32651 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32660 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32663 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32764 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA32839 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA32875 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA33302 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA33422 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA33892 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA34009 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA34485 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA34652 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35053 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35054 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35055 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35069 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35318 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35320 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35321 Flavonoid IFS medium borderline