PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA43348 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA43633 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA44451 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA44699 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA44701 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45144 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45145 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45186 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45188 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45190 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA4524 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA45366 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45392 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA45479 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA45768 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA45985 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA46120 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA46230 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA46231 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA46232 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA46256 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA46383 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA46386 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA46779 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA46892 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47042 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47225 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47369 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47371 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA47374 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA47519 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47529 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47533 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47632 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA47714 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA47779 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA48003 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA48008 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA48199 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA48756 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA48780 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA49110 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA49219 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA49336 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA49345 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA49365 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA49540 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA49678 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA50305 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA50325 Flavonoid IFS medium borderline