PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA50330 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA50333 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA50413 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA50541 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA50611 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51237 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51422 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51510 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51512 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51513 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51514 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA51515 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52088 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52247 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA52250 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA52305 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52756 Flavonoid IFS medium pass
rhynchospora_pubera_mRNA52892 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52893 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52895 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA52931 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA53358 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA53854 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA53993 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA54091 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA54103 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55067 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA55068 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA55069 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA55522 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55523 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55524 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55527 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55528 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55529 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55530 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55531 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55533 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55534 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55536 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55538 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA55539 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA56048 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56049 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56118 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56272 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56287 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA56290 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56808 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA56811 Flavonoid IFS medium borderline