PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA65043 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65044 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65045 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65046 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65049 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65050 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65051 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65053 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65054 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65055 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65485 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA65486 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA65487 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA65489 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA65490 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA6622 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA66465 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA66476 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA66754 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA67218 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA67590 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA67603 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA67621 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA67792 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA67935 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA68583 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA68634 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA68731 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA68732 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA68738 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA68920 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA68995 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA69401 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA69720 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA69804 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA69807 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA69808 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA70066 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA70068 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA70388 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA70602 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA71333 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA71334 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA71336 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA71638 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA72282 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA72288 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA72290 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA72327 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA72795 Flavonoid IFS low borderline