PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA73430 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA73452 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA73453 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA73475 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA73476 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA73477 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA73515 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA73516 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA74087 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA74690 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA74906 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA74944 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA74945 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75061 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75230 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA75392 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75393 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75437 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75642 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA75710 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA75743 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA76024 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA76358 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA76473 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA76495 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA76622 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA76625 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA77019 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA77124 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77276 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77596 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77597 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77600 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA77744 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77753 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77757 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA77860 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA77938 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA78225 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA78231 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA78415 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA78969 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA79399 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA79654 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA79656 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA80293 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA80342 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA80754 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA81076 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA81162 Flavonoid IFS low borderline