PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA16162 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA16163 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA16166 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA16167 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA16405 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA18240 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA18410 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA18923 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA21173 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA21216 Alkaloid IO low borderline
rhynchospora_pubera_mRNA21429 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA22282 Alkaloid IO low borderline
rhynchospora_pubera_mRNA24466 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA25049 Alkaloid IO low borderline
rhynchospora_pubera_mRNA27399 Alkaloid IO medium pass
rhynchospora_pubera_mRNA28136 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA28137 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA30078 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA3101 Alkaloid IO low borderline
rhynchospora_pubera_mRNA35077 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA35322 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA35323 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA3560 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA36740 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA38378 Alkaloid IO low borderline
rhynchospora_pubera_mRNA40387 Alkaloid IO low borderline
rhynchospora_pubera_mRNA42249 Alkaloid IO medium pass
rhynchospora_pubera_mRNA42995 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA44917 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA44918 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA45250 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA46232 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA48756 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA52088 Alkaloid IO low borderline
rhynchospora_pubera_mRNA52248 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA54085 Alkaloid IO low borderline
rhynchospora_pubera_mRNA54125 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA54461 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA58825 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA58828 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA58830 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA59067 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA59550 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA60379 Alkaloid IO low borderline
rhynchospora_pubera_mRNA60836 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA61304 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA61540 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA61541 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA62877 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA64483 Alkaloid IO low borderline