PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA66116 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA66485 Alkaloid IO low borderline
rhynchospora_pubera_mRNA66686 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA70388 Alkaloid IO low borderline
rhynchospora_pubera_mRNA73453 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA75173 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA76009 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA76473 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA78945 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA79071 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA81433 Alkaloid IO medium pass
rhynchospora_pubera_mRNA81790 Alkaloid IO low borderline
rhynchospora_pubera_mRNA82240 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA83871 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA83874 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA85194 Alkaloid IO low borderline
rhynchospora_pubera_mRNA86462 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA86463 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA87738 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA87739 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA89670 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA89671 Alkaloid IO medium borderline
rhynchospora_pubera_mRNA90327 Alkaloid IO low borderline