PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA1519 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA1520 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA1521 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA16099 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA16659 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA17638 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA19241 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA19941 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA20092 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA20223 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA21193 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA21194 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA22288 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA22486 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA23448 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA23449 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA24349 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA24507 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA24761 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA25419 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA25420 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA26560 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA26562 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA26563 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA26564 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA26831 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA29344 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA29533 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA30917 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA3113 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA32209 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA32244 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA32251 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA32254 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA32408 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA33392 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA34243 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA34837 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA35386 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA37250 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA37341 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA37958 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA37963 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA38100 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA38239 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA38935 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA40363 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA41390 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA41392 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA41393 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH