PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA41665 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA44202 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA44400 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA45773 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA47067 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA47102 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA47111 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA47115 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA47216 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA47274 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA48282 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA48283 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA49021 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA49373 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA49563 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA50718 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA51393 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA51548 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA51793 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA52108 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA54104 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA54855 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA55559 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA56230 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA56363 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA56514 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA56519 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA57146 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA57235 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA58760 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA59326 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA61052 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA61605 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA63379 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA63466 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA64063 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA64068 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA64202 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA64341 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA65020 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA65704 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA66464 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA67629 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA67817 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA68817 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA68818 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA69695 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA69844 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA70094 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA70599 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH