PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA70790 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA70791 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA71890 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA71892 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA71893 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA72151 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA74447 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA74639 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA76034 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA77299 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA77300 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA77339 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA77348 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA77351 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA77507 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA78495 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA78496 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA79304 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA80492 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA80493 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA80494 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA80495 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA81049 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA81203 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_pubera_mRNA81455 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA82163 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA83133 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA83687 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA84451 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA85436 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA85582 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA85585 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA85594 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA85629 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_pubera_mRNA86900 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA88262 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA88458 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA90950 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_pubera_mRNA91221 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA91222 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_pubera_mRNA91225 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH