PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA13718 Flavonoid PAL high pass
rhynchospora_pubera_mRNA18633 Flavonoid PAL high pass
rhynchospora_pubera_mRNA18881 Flavonoid PAL high pass
rhynchospora_pubera_mRNA24534 Flavonoid PAL high pass
rhynchospora_pubera_mRNA24715 Flavonoid PAL high pass
rhynchospora_pubera_mRNA36520 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51571 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51572 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51746 Flavonoid PAL high pass
rhynchospora_pubera_mRNA59595 Flavonoid PAL high pass
rhynchospora_pubera_mRNA60790 Flavonoid PAL high pass
rhynchospora_pubera_mRNA62278 Flavonoid PAL low borderline
rhynchospora_pubera_mRNA62656 Flavonoid PAL high pass
rhynchospora_pubera_mRNA69868 Flavonoid PAL high pass
rhynchospora_pubera_mRNA69869 Flavonoid PAL high pass
rhynchospora_pubera_mRNA70042 Flavonoid PAL high pass
rhynchospora_pubera_mRNA81230 Flavonoid PAL high pass
rhynchospora_pubera_mRNA81409 Flavonoid PAL high pass
rhynchospora_pubera_mRNA13718 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA18633 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA18881 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA24534 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA24715 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA36520 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA51571 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA51572 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA51746 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA59595 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA60790 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA62278 Phenylpropanoid PAL low borderline
rhynchospora_pubera_mRNA62656 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA69868 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA69869 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA70042 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA81230 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA81409 Phenylpropanoid PAL high pass
rhynchospora_pubera_mRNA13718 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA18633 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA18881 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA24534 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA24715 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA36520 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51571 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51572 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51746 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA59595 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA60790 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA62278 Rosmarinic Acid PAL low borderline
rhynchospora_pubera_mRNA62656 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA69868 Rosmarinic Acid PAL high pass