PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA1131 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA13371 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA16651 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA1675 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA1676 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA17532 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA17774 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19508 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA19575 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19580 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19581 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA20966 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA21283 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA21284 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA21285 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA21674 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA22485 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA22720 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA22827 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA23972 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA24029 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA24966 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA25237 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA26132 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA26198 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA26217 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA26250 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA26255 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA26257 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA26258 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA27783 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA28231 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA31190 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA31337 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA31393 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA32661 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA33896 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA33897 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA33899 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA33900 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA34844 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA37206 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA37474 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA38602 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA38603 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA38608 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA38671 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA40128 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA40453 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA40454 Alkaloid PMT medium pass