PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA40455 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA40829 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA42634 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA43095 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA46018 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA46185 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA46240 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA47530 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA48784 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA48785 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA48787 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA48788 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA49562 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA49798 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA49904 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA51242 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA51301 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA52269 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA53029 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53098 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53129 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53131 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53132 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53134 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53135 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53136 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA53578 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA54018 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA54019 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA54020 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA54352 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA55974 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA55975 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA55981 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA57016 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA57288 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA59317 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA61059 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA61061 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA63332 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA63584 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA64698 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA64699 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA64703 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA64760 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA66227 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA66543 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA66544 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA66545 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA66941 Alkaloid PMT medium pass