PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA31540 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA31541 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA32606 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA32789 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA32991 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA33250 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33251 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33252 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33646 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA34323 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35102 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35553 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA35625 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35812 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA35813 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA36060 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA36797 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA36818 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA37101 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37102 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37103 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37104 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37105 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37106 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA37662 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA38086 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA38509 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA38923 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA38924 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA39037 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA39159 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA39246 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA39247 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA39248 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA40476 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA40991 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA42 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA42406 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA43 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA44149 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA45202 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA45305 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA45358 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA45359 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA45843 Alkaloid PYKS medium pass
rhynchospora_pubera_mRNA46129 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA46221 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA46391 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA46392 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA47475 Alkaloid PYKS low borderline