PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA45769 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA46207 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA46383 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA47243 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA48780 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA49893 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA50305 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA54856 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA57195 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA57242 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA57579 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA58731 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA59098 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA59099 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA59100 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA60247 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA61278 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA61279 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA61280 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA61281 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA61296 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA61635 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA63059 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA63373 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA63420 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA63795 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA65098 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA68154 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA68583 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA72283 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA72287 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA72795 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA73316 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA73452 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75061 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75436 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75500 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76010 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76024 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76025 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76027 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76028 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76447 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76622 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA77469 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA78527 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA78969 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA80291 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA82389 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA82796 Alkaloid T16H medium borderline