PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA84954 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA84989 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA85080 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85089 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85090 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85092 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85181 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA85184 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA85337 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85339 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA8545 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85654 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA85857 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA85918 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA86308 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA86309 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA86577 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA86609 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA86682 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA86901 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87193 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA87280 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87299 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87307 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87473 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87521 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87522 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87945 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA87957 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA87958 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA88915 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA89019 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA89607 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA89608 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA89695 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA90261 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA90771 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA90772 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA90773 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA90818 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA9437 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA9625 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA9705 Alkaloid T3O medium borderline