PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA20422 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20425 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20426 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20773 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21175 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA21208 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA21492 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21493 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21910 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA22136 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22261 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22279 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22280 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA22459 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA22602 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA23276 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA23362 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA23430 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA23561 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA23637 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA24034 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA24397 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA24465 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA24495 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA24545 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA24547 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA24569 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA24736 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA24738 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA24739 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA25216 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA25218 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA25990 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA25991 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA25993 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA26309 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA26962 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA26964 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA26966 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA26968 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA26969 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA26970 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA27011 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA27012 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA27545 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA28113 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA28196 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA2827 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA28484 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA28770 Alkaloid T3O medium borderline