PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA2882 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA28880 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA28882 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA2946 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA29835 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA29836 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA29839 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA29840 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA29853 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA30298 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30299 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30347 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30520 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30530 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30549 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA30640 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA30916 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31160 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31226 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31269 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31534 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31933 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31989 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32186 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32509 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA32513 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32651 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32660 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA32663 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32752 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32755 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32756 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32764 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32765 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32767 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32839 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32875 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33048 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33302 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA33422 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33927 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34009 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34429 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34431 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34432 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34485 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA34498 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA34652 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34861 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA35067 Alkaloid T3O medium borderline