PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA43059 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA43633 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA43735 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44696 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44697 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44698 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44699 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44701 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA44714 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA45144 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45145 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45186 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45188 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45190 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45191 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA4524 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA45357 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45366 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45386 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45479 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA45772 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA45985 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA46065 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA46120 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA46231 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA46386 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA46779 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA46843 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47042 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA47368 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA47371 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47374 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47519 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA47529 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA47533 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA47620 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47623 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47624 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47632 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47633 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47635 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47714 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA47751 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA47779 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA47923 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA48008 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA48199 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA48312 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA48754 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA48755 Alkaloid T3O medium borderline