PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA48814 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA49110 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA49219 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA49336 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA49345 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA49364 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA49365 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA49366 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA49540 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA49678 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA50325 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA50330 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA50413 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA50541 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA50611 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA50738 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA51237 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51439 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA51510 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51512 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51536 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51581 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA51607 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA51767 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51768 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA51770 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA52176 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA52247 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA52250 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA52251 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA52304 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA52758 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA52892 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA52893 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA52895 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA52931 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA53854 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA54091 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA54123 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA54541 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA54857 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA54858 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA54861 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA55036 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA55040 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA55067 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA55068 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA55069 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA55478 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56045 Alkaloid T3O medium borderline