PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA56046 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56048 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56049 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56117 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA56118 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA56197 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56272 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56274 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56286 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56288 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56290 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56808 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56811 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56812 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA56840 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA57048 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA57796 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA5843 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA58496 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA58497 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA58604 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA58724 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA58730 Alkaloid T3O high pass
rhynchospora_pubera_mRNA58892 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA59084 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA59086 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA59300 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA59954 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA59956 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA59959 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA60005 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA60006 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA60019 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA60163 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA60215 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA60363 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA60378 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA60426 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA60428 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61076 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA61282 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61295 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61297 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61475 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA61634 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61643 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA61677 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA61784 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA62358 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA62732 Alkaloid T3O medium pass