PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA63551 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA63766 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA63796 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64280 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64297 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64371 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64413 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64414 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64416 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA64484 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA64485 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA64546 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65485 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65486 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65487 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65489 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65490 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65518 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65523 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA65700 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA65703 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA66025 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA6622 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA66447 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA66476 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA66753 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA66755 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA67218 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA67590 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA67603 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA67620 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA67621 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA67623 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA67792 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA67935 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA68634 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA68732 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA68738 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA68799 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA68920 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA68995 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA69401 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA69804 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA69832 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA69878 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA69881 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA69883 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA69905 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA70066 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA70067 Alkaloid T3O medium pass