PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA70068 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA70485 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA70557 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA70601 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA71205 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA71333 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA71334 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA71336 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA71621 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA71638 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA72282 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72284 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72285 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72286 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72288 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72289 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72290 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72327 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA72861 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA73430 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA73515 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA73516 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74087 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74198 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74906 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA74943 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74944 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74945 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA74957 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA75392 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75393 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75437 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75438 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75439 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75612 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75710 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA75743 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA76033 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA76244 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA76313 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA76358 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA76625 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA77019 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA77276 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA77596 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA77600 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA77602 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA77744 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA77753 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA77757 Alkaloid T3O low borderline