PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA1284 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA13072 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA14 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA19871 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA20018 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA20402 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA20403 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA20404 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA20405 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA21491 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA21615 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA21975 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA25668 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA25861 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA25862 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA26391 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA27533 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27534 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27535 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27536 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27537 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27538 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA27539 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA28508 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA29685 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA32477 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA33333 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA38167 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA38315 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA39596 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA39597 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA39618 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA40656 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA40774 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA41204 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42379 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42383 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42384 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42385 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42386 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42387 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42388 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42389 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA42390 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA43373 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA44546 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA48223 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA48956 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA52545 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA52754 Terpenoid TPS medium pass