PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
Reset
Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA52755 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA52782 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA52783 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA53259 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA53413 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA53414 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA53514 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA53918 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA54876 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA54877 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA59960 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA64267 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA64545 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA65682 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA65683 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA65684 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA66752 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA66869 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA67277 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA71007 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA71203 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA71276 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA71715 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA72847 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72848 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72849 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72850 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72851 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72852 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72853 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72854 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA72855 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA73834 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA74786 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA74787 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA78441 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA79237 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA79784 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA80009 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA80012 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA87559 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA88106 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA89287 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90003 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90267 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90268 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90269 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90270 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90271 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA90272 Terpenoid TPS medium pass