Rhynchospora pubera (rhynchospora_pubera)
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Imported from atlas release summary for Rhynchospora pubera.
6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
6073
Candidate Genes
C3'H/CYP98A
6.35%
C4H
6.27%
BAHD
5.28%
UGT
4.78%
POD
4.42%
7DLGT
4.4%
UFGT
4.37%
T3O
3.89%
Other Families
60.24%
More Families (97)
IFS
521
3.73%
4CL
478
3.42%
CYP76
430
3.08%
DWF4/CYP90B1
385
2.76%
F3H
318
2.28%
F3'H/CYP75B
314
2.25%
BR6OX2/CYP85A2
280
2.0%
NMT
260
1.86%
CYP71
251
1.8%
STR
239
1.71%
PYKS
235
1.68%
CAD
214
1.53%
CSE
189
1.35%
SMT1/SMT2/SMT3
175
1.25%
TRI/TRII
168
1.2%
HCT
161
1.15%
COMT
158
1.13%
16OMT
151
1.08%
CHS
150
1.07%
H6H
149
1.07%
PMT
148
1.06%
SGD
145
1.04%
CODM/T6ODM
144
1.03%
LAC
141
1.01%
CAS
126
0.9%
RAS
122
0.87%
T16H
116
0.83%
IFR
115
0.82%
SLS
114
0.82%
CYP90D1
114
0.82%
ANR
108
0.77%
TPS
102
0.73%
GS
99
0.71%
GES
96
0.69%
COR
82
0.59%
NCS
76
0.54%
IO
73
0.52%
FNS
72
0.52%
7DLH
64
0.46%
CYP51G1
63
0.45%
TAT
59
0.42%
PAL
54
0.39%
CCR
52
0.37%
G8O/G8H
49
0.35%
8HGO
46
0.33%
F3'5'H/CYP75A
46
0.33%
LAMT
38
0.27%
CNMT
37
0.26%
CPD/CYP90A1
36
0.26%
F5H/CYP84A
34
0.24%
BBE
29
0.21%
BR6OX1/CYP85A1
29
0.21%
DET2
28
0.2%
ANS/LDOX
26
0.19%
FPPS
26
0.19%
CPR
24
0.17%
DFR
22
0.16%
HPPR
22
0.16%
AACT
22
0.16%
CYP719
21
0.15%
MPO
21
0.15%
CCoAOMT
19
0.14%
SQS/FDFT1
18
0.13%
CHI
17
0.12%
ROT3/CYP90C1
17
0.12%
HMGR
17
0.12%
TYDC_DDC
16
0.11%
MVD
16
0.11%
CYP80B1
15
0.11%
GGPPS
15
0.11%
TDC
14
0.1%
MVK
13
0.09%
SMO1/SMO2
12
0.09%
DXS
12
0.09%
XMT_MXMT_DXMT
11
0.08%
SQE
11
0.08%
CMK/IspE
11
0.08%
FLS
10
0.07%
HYD1
9
0.06%
ISY
8
0.06%
DWF7
8
0.06%
PMK
8
0.06%
MCT/IspD
8
0.06%
IDI
8
0.06%
ADC
6
0.04%
CPI1
6
0.04%
FK
5
0.04%
HDS/IspG
5
0.04%
CYP80F1
4
0.03%
DWF5
4
0.03%
MDS/IspF
4
0.03%
HMGS
4
0.03%
HDR/IspH
4
0.03%
DXR
4
0.03%
6OMT_4OMT_SOMT
3
0.02%
DWF1
3
0.02%
ODC
2
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1564 | 19 | UGT (637) | View species results |
| Alkaloid pathway | 1412 | 23 | 7DLGT (272) | View species results |
| Phenylpropanoid pathway | 1386 | 11 | POD (610) | View species results |
| Flavonoid pathway | 944 | 13 | UFGT (575) | View species results |
| Rosmarinic acid pathway | 481 | 7 | C4H (216) | View species results |
| Steroid pathway | 286 | 13 | SMT1/SMT2/SMT3 (113) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 5282 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1021 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhynchospora_pubera_mRNA83973 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| rhynchospora_pubera_mRNA85216 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| rhynchospora_pubera_mRNA85217 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| rhynchospora_pubera_mRNA85316 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| rhynchospora_pubera_mRNA85599 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| rhynchospora_pubera_mRNA86010 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| rhynchospora_pubera_mRNA86011 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| rhynchospora_pubera_mRNA86051 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| rhynchospora_pubera_mRNA86052 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| rhynchospora_pubera_mRNA86053 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| rhynchospora_pubera_mRNA86491 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| rhynchospora_pubera_mRNA87445 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| rhynchospora_pubera_mRNA88271 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| rhynchospora_pubera_mRNA89594 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| rhynchospora_pubera_mRNA90186 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| rhynchospora_pubera_mRNA90187 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| rhynchospora_pubera_mRNA90424 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| rhynchospora_pubera_mRNA90559 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |