PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA10184 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA1060 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA12565 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA13197 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA13315 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA13428 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA14080 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA14448 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA14524 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA14892 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA14895 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA15737 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA16584 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA16585 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA17141 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18219 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18239 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18259 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18260 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18261 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18387 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18388 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18389 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18390 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18411 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18432 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA18433 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18480 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18481 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18523 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18553 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18694 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18932 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18933 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18934 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18935 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18936 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA19038 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19039 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19263 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19264 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19266 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA19268 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19269 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA19293 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA19295 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19296 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA19340 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19341 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA19342 Flavonoid UFGT high pass