PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA76284 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA76340 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA76965 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA77591 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA77592 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA77593 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA77716 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA77849 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA77850 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78012 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78015 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78017 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA78481 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA78733 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78922 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA78923 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA78927 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78928 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA78929 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA79280 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA79341 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA79376 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA79489 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA79496 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA79689 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA79850 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA79974 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA80031 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA80032 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA80252 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA80281 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA80283 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA80768 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA80769 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81098 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81099 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81100 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81101 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA81361 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA81364 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81436 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81493 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81494 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81495 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA81537 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA81538 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA81540 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA81541 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA81974 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA82125 Flavonoid UFGT low borderline