PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA82319 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA82532 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA82630 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA82808 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA82859 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA83041 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA83136 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA83424 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA83613 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA83710 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA83712 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA84009 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA84010 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84011 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84012 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA84106 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84108 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84110 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84219 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84916 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84917 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA84918 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA85091 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA85098 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA85220 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA85221 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA85344 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA85345 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA85346 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA85974 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA86643 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA86644 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA86697 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA86698 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA86699 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA86701 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA86704 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA86841 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA86842 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87386 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87388 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87389 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87390 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87772 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87909 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87910 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88541 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88560 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88561 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88594 Flavonoid UFGT medium pass