PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA24788 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24789 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24791 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24792 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25082 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25122 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25123 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25178 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25207 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25603 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25604 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25605 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25648 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25709 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25801 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25960 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA26174 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA26345 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA26618 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA27417 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA27606 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA27607 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA27608 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA28636 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29005 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA29062 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29063 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA29201 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29202 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29204 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29205 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA29206 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29236 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29258 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29887 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA29888 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA30038 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA30435 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA30436 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA30437 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA30438 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA30974 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31135 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31137 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA31138 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31139 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31140 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31197 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA31198 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA31252 Flavonoid UFGT high pass