PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA31876 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA32504 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA32505 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA32624 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA32753 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA32754 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA32911 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA32912 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA32913 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA32915 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA32917 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA33631 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA33750 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA33853 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA33854 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA33855 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA34310 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA34403 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA34405 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA3466 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA34909 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA35753 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA36452 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36599 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA36600 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA36718 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36719 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36720 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36721 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36741 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA36764 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38119 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38121 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38225 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38233 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38356 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38357 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38496 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38498 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38499 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38500 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38832 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38833 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38834 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38835 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38836 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38837 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA38840 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38841 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA38843 Flavonoid UFGT high pass